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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
1
Hi-C
Assay category
76
DNA methylation
60
DNA accessibility
52
Transcription
1
3D chromatin structure
Date released
134
May, 2022
22
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
1
March, 2019
Available data
3278
bam
3078
bigWig
1725
bed narrowPeak
1593
tsv
1358
fastq
958
bigBed narrowPeak
398
tagAlign
286
bed broadPeak
249
bigBed broadPeak
237
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
189
Homo sapiens
Biosample type
163
primary cell
25
tissue
1
cell line
Organ
87
pancreas
86
epithelium
8
heart
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
limb
1
pericardium
Project
153
HPAP
36
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
153
Klaus Kaestner, Upenn
35
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
189 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
cell line
HepG2
1
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