Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
16
RRBS
Assay category
73
DNA methylation
60
DNA accessibility
52
Transcription
Date released
134
May, 2022
21
July, 2019
19
September, 2020
7
November, 2018
4
August, 2017
Available data
3335
bam
3061
bigWig
1717
bed narrowPeak
1591
tsv
1356
fastq
995
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
252
bigBed broadPeak
239
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
185
Homo sapiens
Biosample type
162
primary cell
22
tissue
1
cell line
Organ
86
epithelium
86
pancreas
8
heart
4
kidney
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
32
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
153
Klaus Kaestner, Upenn
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 8 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
cell line
HepG2
1
See all biosamples
Download