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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
13
WGBS
8
single cell RNA-seq
Assay category
30
DNA methylation
8
Transcription
Date released
21
July, 2019
6
August, 2017
6
February, 2021
4
November, 2018
1
September, 2018
Available data
2703
bam
2546
bigWig
1603
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
38
Homo sapiens
Biosample type
25
tissue
12
primary cell
1
cell line
Organ
9
kidney
8
heart
6
epithelium
pancreas
4
liver
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
38
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
38 results
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RRBS
WGBS
single cell RNA-seq
tissue
kidney
1
5
heart left ventricle
1
2
adipose tissue
2
heart right ventricle
2
liver
1
1
+ See 8 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
1
See all biosamples
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