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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
Assay category
17
DNA binding
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
14
November, 2017
2
October, 2019
1
August, 2017
Available data
362
bam
358
fastq
186
tsv
157
txt
152
tagAlign
147
bigWig
108
bed narrowPeak
93
zippedFastqFolder
38
bed broadPeak
34
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
10
bed bed3+
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
14
cell line
3
primary cell
Organ
14
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
17
AMP
Genome assembly (visualization)
79
hg19
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
assembly!
GRCh38
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
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