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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
Assay category
DNA accessibility
70
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
57
November, 2017
11
August, 2017
2
October, 2019
Available data
2900
bam
2678
bigWig
1586
tsv
1185
bed narrowPeak
1167
fastq
708
bigBed narrowPeak
398
tagAlign
157
txt
105
bed broadPeak
93
zippedFastqFolder
70
bigBed broadPeak
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
70
Homo sapiens
Biosample type
54
cell line
16
primary cell
Organ
54
liver
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
70
AMP
Genome assembly (visualization)
70
hg19
55
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
cell line
HepG2
54
primary cell
skeletal muscle myoblast
11
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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