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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
5
Hi-C
Assay category
206
DNA accessibility
DNA binding
5
3D chromatin structure
Date released
187
June, 2019
9
November, 2018
8
October, 2019
4
July, 2019
2
August, 2017
1
November, 2020
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
211
Homo sapiens
Biosample type
176
tissue
32
primary cell
2
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
211
AMP
Genome assembly (visualization)
206
GRCh38
188
hg19
Lab
211
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
+ See 19 more…
cell line
Panc1
1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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