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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
49
transcription factor
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
47
November, 2017
2
August, 2017
Available data
2399
bam
2087
bigWig
1600
tsv
1117
fastq
753
bed narrowPeak
442
bigBed narrowPeak
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
51
bed broadPeak
49
bigBed broadPeak
44
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
49
Homo sapiens
Biosample type
44
cell line
5
primary cell
Organ
44
liver
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
49
AMP
Genome assembly (visualization)
49
hg19
36
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assay_title!
DNase-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
44
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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