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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
5
ChIP-seq
Assay category
205
DNA accessibility
5
DNA binding
Target of assay
16
histone
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
9
November, 2018
6
October, 2019
4
August, 2017
3
November, 2017
1
November, 2020
Available data
2060
bam
1810
bigWig
1481
tsv
717
fastq
592
bed narrowPeak
316
bigBed narrowPeak
245
bed bed3+
212
bed broadPeak
210
bigBed broadPeak
160
txt
153
zippedFastqFolder
68
tagAlign
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
210
Homo sapiens
Biosample type
176
tissue
cell line
33
primary cell
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
210
AMP
Genome assembly (visualization)
208
GRCh38
187
hg19
Lab
210
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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