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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
78
ChIP-seq
Assay category
205
DNA accessibility
78
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
other context
1
other post-translational modification
Date released
187
June, 2019
63
November, 2017
14
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3096
bam
2865
bigWig
1640
bed narrowPeak
1469
tsv
1212
fastq
1020
bigBed narrowPeak
358
tagAlign
320
bed broadPeak
283
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
283
Homo sapiens
Biosample type
176
tissue
58
cell line
49
primary cell
in vitro differentiated cells
Organ
78
kidney
62
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
283
AMP
Genome assembly (visualization)
265
GRCh38
260
hg19
Lab
283
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
target.investigated_as!
other context
BIOSAMPLE
ASSAY
283 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
57
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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