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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
84
RNA microarray
59
total RNA-seq
58
ChIP-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
182
DNA accessibility
72
Transcription
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
89
February, 2021
58
November, 2017
57
August, 2021
9
November, 2018
7
February, 2023
7
May, 2022
5
October, 2019
1
August, 2017
1
October, 2022
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
396
Homo sapiens
Biosample type
333
tissue
60
cell line
primary cell
4
in vitro differentiated cells
Organ
130
kidney
88
bone element
61
liver
36
limb
33
musculature of body
27
brain
27
heart
18
ureter
13
pancreas
5
blood vessel
5
vasculature
4
artery
4
skeleton
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
397
AMP
Genome assembly (visualization)
224
hg19
222
GRCh38
Lab
331
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
6
audit script error
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
397 results
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DNase-seq
RNA microarray
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
13
49
13
heart
18
muscle of arm
17
brain
14
+ See 46 more…
cell line
HepG2
58
MIN6
1
Panc1
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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