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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
14
ChIP-seq
Assay category
178
DNA accessibility
14
DNA binding
Target of assay
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
14
November, 2017
9
November, 2018
5
October, 2019
1
August, 2017
Available data
2283
bam
2001
bigWig
1320
tsv
919
bed narrowPeak
538
bigBed narrowPeak
474
fastq
289
tagAlign
227
bed broadPeak
215
bed bed3+
192
bigBed broadPeak
95
txt
26
bed bedMethyl
26
bigBed bedMethyl
17
bedpe bed3+
14
hic
11
bed bed3
6
csv
4
bed bedgraph
2
ibed
1
hdf5
1
tagAlign bed3+
Organism
192
Homo sapiens
Biosample type
176
tissue
primary cell
15
cell line
1
in vitro differentiated cells
Organ
68
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
17
liver
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
192
AMP
Genome assembly (visualization)
190
GRCh38
176
hg19
Lab
192
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
192 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
14
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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