Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
15
DNase-seq
Assay category
58
DNA binding
15
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
58
November, 2017
9
November, 2018
5
October, 2019
1
August, 2017
Available data
2620
bam
2393
bigWig
1359
bed narrowPeak
1330
tsv
949
fastq
770
bigBed narrowPeak
298
tagAlign
161
txt
110
bed broadPeak
73
bed bed3+
73
bigBed broadPeak
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
59
cell line
primary cell
13
tissue
1
in vitro differentiated cells
Organ
61
liver
4
limb
3
pancreas
2
artery
2
blood vessel
2
brain
2
connective tissue
2
nerve
2
vasculature
1
adipose tissue
1
spleen
Project
73
AMP
Genome assembly (visualization)
73
hg19
59
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
month_released!
June, 2019
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
tissue
body of pancreas
2
brain
2
liver
2
tibial artery
2
tibial nerve
2
+ See 3 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download