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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
DNase-seq
58
ChIP-seq
Assay category
169
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
58
November, 2017
November, 2018
5
October, 2019
1
August, 2017
Available data
2696
bam
2476
bigWig
1449
bed narrowPeak
1330
tsv
862
fastq
860
bigBed narrowPeak
298
tagAlign
264
bed broadPeak
227
bed bed3+
227
bigBed broadPeak
161
txt
64
xls
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
227
Homo sapiens
Biosample type
167
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
58
liver
36
limb
32
musculature of body
27
heart
25
brain
18
ureter
5
blood vessel
5
pancreas
5
vasculature
4
artery
3
eye
2
connective tissue
2
nerve
1
adipose tissue
Project
227
AMP
Genome assembly (visualization)
213
GRCh38
211
hg19
Lab
227
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
month_released!
November, 2018
BIOSAMPLE
ASSAY
227 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
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