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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
57
ChIP-seq
Assay category
178
DNA accessibility
57
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
other context
1
other post-translational modification
Date released
163
June, 2019
57
November, 2017
9
November, 2018
5
October, 2019
1
August, 2017
Available data
2778
bam
2551
bigWig
1517
bed narrowPeak
1330
tsv
944
fastq
928
bigBed narrowPeak
298
tagAlign
272
bed broadPeak
236
bed bed3+
235
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
235
Homo sapiens
Biosample type
176
tissue
58
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
60
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
235
AMP
Genome assembly (visualization)
221
GRCh38
219
hg19
Lab
235
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
target.investigated_as!
other context
BIOSAMPLE
ASSAY
235 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
57
Panc1
1
in vitro differentiated cells
adipocyte
1
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