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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
30
DNase-seq
3
Hi-C
Assay category
79
DNA binding
30
DNA accessibility
3
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
15
August, 2017
5
October, 2019
3
October, 2022
1
November, 2020
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
112
Homo sapiens
Biosample type
tissue
59
cell line
52
primary cell
1
in vitro differentiated cells
Organ
60
liver
25
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
pancreas
4
vein
3
heart
1
eye
1
musculature of body
Project
109
AMP
3
HPAP
Genome assembly (visualization)
105
hg19
91
GRCh38
Lab
109
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
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in vitro differentiated cells
adipocyte
1
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