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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
1
DNase-seq
Assay category
62
DNA binding
1
DNA accessibility
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
50
November, 2017
13
August, 2017
Available data
2959
bam
2930
bigWig
1632
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
951
fastq
282
bed broadPeak
267
bigBed broadPeak
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
63
Homo sapiens
Biosample type
44
cell line
18
primary cell
1
in vitro differentiated cells
Organ
44
liver
6
brain
4
epithelium
4
vasculature
2
blood vessel
1
connective tissue
Project
63
AMP
Genome assembly (visualization)
81
hg19
63
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
11
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
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