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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
DNase-seq
Assay category
21
DNA binding
2
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
15
August, 2017
6
November, 2017
2
October, 2019
Available data
2810
bam
2607
bigWig
1481
tsv
1373
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
23
Homo sapiens
Biosample type
cell line
22
primary cell
1
in vitro differentiated cells
Organ
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
Project
23
AMP
Genome assembly (visualization)
23
hg19
19
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
inconsistent assembly
files.file_type!
bed bed3+
biosample_type!
cell line
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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