Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
64
ATAC-seq
2
DNase-seq
Assay category
79
DNA binding
66
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
August, 2021
64
November, 2017
15
August, 2017
2
October, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
145
Homo sapiens
Biosample type
64
tissue
58
cell line
22
primary cell
1
in vitro differentiated cells
Organ
64
kidney
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
Project
145
AMP
Genome assembly (visualization)
127
GRCh38
81
hg19
Lab
81
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
145 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
kidney
64
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
Download