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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
2
pCHi-C
Assay category
8
DNA binding
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
2
March, 2020
2
October, 2019
Available data
3392
bam
3169
bigWig
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
6
cell line
2
in vitro differentiated cells
2
primary cell
Organ
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
10
AMP
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
pCHi-C
cell line
HepG2
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
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