Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
53
November, 2017
2
August, 2017
2
October, 2019
Available data
3183
bam
2920
bigWig
1600
tsv
1568
bed narrowPeak
1346
fastq
833
bigBed narrowPeak
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
57
Homo sapiens
Biosample type
47
cell line
10
primary cell
Organ
47
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
57
AMP
Genome assembly (visualization)
57
hg19
42
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
47
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
Download