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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
74
ChIP-seq
Assay category
197
DNA accessibility
74
DNA binding
Target of assay
48
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
62
November, 2017
14
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
3209
bam
3015
bigWig
1685
bed narrowPeak
1532
tsv
1352
fastq
960
bigBed narrowPeak
390
tagAlign
307
bed broadPeak
271
bigBed broadPeak
261
bed bed3+
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
271
Homo sapiens
Biosample type
171
tissue
59
cell line
40
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
271
AMP
Genome assembly (visualization)
255
GRCh38
249
hg19
Lab
271
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
inconsistent assembly
files.file_type!
txt
organ_slims!
blood vessel
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
271 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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