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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
ChIP-seq
16
ATAC-seq
5
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
223
DNA accessibility
5
3D chromatin structure
2
Transcription
Date released
187
June, 2019
14
February, 2023
9
November, 2018
8
October, 2019
4
February, 2021
4
July, 2019
2
August, 2017
2
August, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
234
Homo sapiens
Biosample type
182
tissue
36
primary cell
12
in vitro differentiated cells
4
cell line
Organ
78
kidney
36
brain
36
limb
34
musculature of body
30
heart
23
connective tissue
18
epithelium
18
ureter
13
vasculature
11
blood vessel
8
liver
8
pancreas
4
artery
4
bone element
4
eye
4
skeleton
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
234
AMP
Genome assembly (visualization)
211
hg19
208
GRCh38
Lab
230
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
1
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
234 results
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DNase-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 44 more…
primary cell
cardiac fibroblast
3
osteoblast
1
1
1
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 20 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
1
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
1
Panc1
1
1
See all biosamples
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