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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
7
ATAC-seq
1
DNase-seq
Assay category
17
DNA binding
8
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
14
November, 2017
4
February, 2021
3
February, 2023
2
August, 2017
2
October, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
25
Homo sapiens
Biosample type
14
cell line
7
in vitro differentiated cells
4
primary cell
Organ
14
liver
4
connective tissue
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
25
AMP
Genome assembly (visualization)
269
hg19
GRCh38
Lab
22
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
assembly!
GRCh38
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
14
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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