Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
21
ChIP-seq
6
Hi-C
Assay category
28
DNA accessibility
21
DNA binding
6
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
14
August, 2017
6
November, 2017
5
October, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
55
Homo sapiens
Biosample type
187
tissue
61
cell line
55
primary cell
5
in vitro differentiated cells
Organ
27
epithelium
14
vasculature
11
brain
10
blood vessel
10
kidney
6
connective tissue
6
vein
3
heart
3
pancreas
2
liver
1
eye
1
musculature of body
Project
51
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
47
hg19
46
GRCh38
Lab
51
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
55 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 22 more…
See all biosamples
Download