Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
926
total RNA-seq
174
DNase-seq
103
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1045
Transcription
175
DNA accessibility
Date released
452
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
24
February, 2020
19
November, 2019
9
November, 2018
6
April, 2018
6
October, 2019
4
February, 2023
2
December, 2019
Available data
1865
bam
1741
bigWig
1071
tsv
957
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1245
Homo sapiens
Biosample type
1245
tissue
319
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
459
connective tissue
401
adipose tissue
281
pancreas
157
liver
138
heart
80
kidney
58
bone element
50
brain
43
limb
39
musculature of body
19
blood vessel
19
vasculature
18
ureter
8
artery
8
eye
nerve
3
epithelium
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1245
AMP
Genome assembly (visualization)
1087
GRCh38
1072
hg19
Lab
1244
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
organ_slims!
nerve
BIOSAMPLE
ASSAY
1245 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
267
1
liver
147
2
1
1
bone tissue
58
heart left ventricle
3
3
18
1
+ See 86 more…
See all biosamples
Download