Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
266
DNA accessibility
DNA binding
52
Transcription
41
DNA methylation
Date released
187
June, 2019
134
May, 2022
19
September, 2020
9
November, 2018
7
October, 2019
2
August, 2017
1
November, 2020
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
359
Homo sapiens
Biosample type
181
primary cell
176
tissue
1
cell line
1
in vitro differentiated cells
Organ
96
epithelium
87
pancreas
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
206
AMP
153
HPAP
Genome assembly (visualization)
205
GRCh38
183
hg19
Lab
206
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
359 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
3
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download