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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
79
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
265
DNA accessibility
79
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
64
November, 2017
19
September, 2020
14
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
437
Homo sapiens
Biosample type
202
primary cell
176
tissue
59
cell line
in vitro differentiated cells
Organ
102
epithelium
87
pancreas
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
284
AMP
153
HPAP
Genome assembly (visualization)
266
GRCh38
261
hg19
Lab
284
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
437 results
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DNase-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
See all biosamples
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