Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
77
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
259
DNA accessibility
77
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
64
November, 2017
19
September, 2020
15
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
3142
bam
2922
bigWig
1588
bed narrowPeak
1584
tsv
1358
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
429
Homo sapiens
Biosample type
198
primary cell
172
tissue
58
cell line
1
in vitro differentiated cells
Organ
98
epithelium
86
pancreas
78
kidney
63
liver
38
brain
33
musculature of body
32
limb
30
heart
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
276
AMP
153
HPAP
Genome assembly (visualization)
260
GRCh38
253
hg19
Lab
276
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
429 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
pancreatic acinar cell
4
+ See 21 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
58
in vitro differentiated cells
adipocyte
1
See all biosamples
Download