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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
66
ChIP-seq
15
RRBS
15
WGBS
Assay category
204
DNA accessibility
66
DNA binding
30
DNA methylation
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
23
July, 2019
August, 2017
16
November, 2018
9
October, 2019
1
November, 2020
Available data
3110
bam
2857
bigWig
1635
bed narrowPeak
1511
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
300
Homo sapiens
Biosample type
196
tissue
60
cell line
44
primary cell
Organ
82
kidney
65
liver
40
brain
38
heart
37
limb
35
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
9
connective tissue
5
eye
4
artery
4
vein
3
spleen
2
adipose tissue
2
nerve
1
pericardium
Project
300
AMP
Genome assembly (visualization)
269
GRCh38
262
hg19
Lab
300
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
300 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 43 more…
cell line
HepG2
58
1
Panc1
1
primary cell
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
+ See 17 more…
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