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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
48
ChIP-seq
Assay category
194
DNA accessibility
48
DNA binding
Target of assay
48
transcription factor
27
histone
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
46
November, 2017
9
November, 2018
4
August, 2017
October, 2019
1
November, 2020
Available data
2433
bam
2185
bigWig
1516
tsv
1126
fastq
886
bed narrowPeak
630
bigBed narrowPeak
244
bed broadPeak
242
bigBed broadPeak
233
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
62
tagAlign
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
242
Homo sapiens
Biosample type
169
tissue
44
cell line
28
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
35
brain
33
musculature of body
32
limb
30
heart
18
ureter
16
epithelium
9
connective tissue
9
vasculature
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
242
AMP
Genome assembly (visualization)
228
GRCh38
220
hg19
Lab
242
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2019
organ_slims!
blood vessel
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
242 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
44
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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