Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
58
ChIP-seq
Assay category
173
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
58
November, 2017
9
November, 2018
3
October, 2019
1
August, 2017
Available data
2630
bam
2390
bigWig
1370
bed narrowPeak
1264
tsv
949
fastq
871
bigBed narrowPeak
292
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
231
Homo sapiens
Biosample type
171
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
231
AMP
Genome assembly (visualization)
217
GRCh38
215
hg19
Lab
231
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
organ_slims!
blood vessel
biosample_type!
primary cell
BIOSAMPLE
ASSAY
231 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download