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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
62
ChIP-seq
Assay category
195
DNA accessibility
62
DNA binding
Target of assay
46
transcription factor
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
62
November, 2017
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2930
bam
2707
bigWig
1506
bed narrowPeak
1443
tsv
1068
fastq
921
bigBed narrowPeak
307
tagAlign
268
bed broadPeak
257
bigBed broadPeak
229
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
257
Homo sapiens
Biosample type
171
tissue
59
cell line
27
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
257
AMP
Genome assembly (visualization)
243
GRCh38
235
hg19
Lab
257
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
organ_slims!
blood vessel
month_released!
August, 2017
BIOSAMPLE
ASSAY
257 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 14 more…
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