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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
79
ChIP-seq
6
ATAC-seq
Assay category
203
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
64
November, 2017
14
August, 2017
9
October, 2019
8
November, 2018
5
February, 2023
1
February, 2021
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
282
Homo sapiens
Biosample type
179
tissue
60
cell line
43
primary cell
Organ
78
kidney
64
liver
39
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
connective tissue
13
blood vessel
7
pancreas
4
artery
4
bone element
4
eye
4
skeleton
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
282
AMP
Genome assembly (visualization)
260
hg19
259
GRCh38
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
282 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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