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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
DNase-seq
79
ChIP-seq
Assay category
161
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
149
June, 2019
64
November, 2017
14
August, 2017
8
November, 2018
5
October, 2019
Available data
2685
bam
2468
bigWig
1610
bed narrowPeak
1257
fastq
1115
tsv
930
bigBed narrowPeak
376
tagAlign
276
bed broadPeak
240
bigBed broadPeak
210
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
240
Homo sapiens
Biosample type
138
tissue
59
cell line
43
primary cell
Organ
78
kidney
63
liver
38
brain
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
240
AMP
Genome assembly (visualization)
222
GRCh38
218
hg19
Lab
240
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
limb
BIOSAMPLE
ASSAY
240 results
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DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 32 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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