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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
15
ChIP-seq
Assay category
186
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
172
June, 2019
15
August, 2017
6
November, 2018
5
October, 2019
2
November, 2017
1
November, 2020
Available data
2420
bam
2230
bigWig
1275
tsv
1204
bed narrowPeak
651
fastq
623
bigBed narrowPeak
309
tagAlign
244
bed bed3+
238
bed broadPeak
201
bigBed broadPeak
161
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
16
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
7
csv
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
201
Homo sapiens
Biosample type
173
tissue
26
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
38
brain
36
limb
33
musculature of body
30
heart
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
201
AMP
Genome assembly (visualization)
199
GRCh38
184
hg19
Lab
201
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
liver
epithelium
BIOSAMPLE
ASSAY
201 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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