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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
73
ChIP-seq
Assay category
173
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
158
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2863
bigWig
2839
bam
1501
bed narrowPeak
1344
tsv
1002
fastq
881
bigBed narrowPeak
282
bed broadPeak
246
bigBed broadPeak
238
bed bed3+
234
tagAlign
19
bedpe bed3+
19
hic
18
bed bedMethyl
18
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
155
tissue
59
cell line
31
primary cell
1
in vitro differentiated cells
Organ
71
kidney
63
liver
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
vasculature
12
blood vessel
8
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
246
AMP
Genome assembly (visualization)
252
GRCh38
246
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
246 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 25 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
2
astrocyte of the hippocampus
1
brain pericyte
1
+ See 10 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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