Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
3
Hi-C
Assay category
6
DNA binding
3
3D chromatin structure
Target of assay
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
3
October, 2022
Available data
3207
bam
3014
bigWig
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
6
cell line
3
primary cell
Organ
6
liver
5
epithelium
3
pancreas
2
blood vessel
vasculature
2
vein
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
2
inconsistent control read length
organ_slims!
vasculature
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
6
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
Download