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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
73
ChIP-seq
Assay category
186
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
174
June, 2019
60
November, 2017
14
August, 2017
8
November, 2018
3
October, 2019
Available data
2614
bam
2404
bigWig
1569
bed narrowPeak
1251
fastq
1054
tsv
931
bigBed narrowPeak
370
tagAlign
295
bed broadPeak
259
bigBed broadPeak
233
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
20
bedpe bed3+
20
hic
8
csv
6
bed bed3
3
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
259
Homo sapiens
Biosample type
169
tissue
59
cell line
31
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
243
GRCh38
238
hg19
Lab
259
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
connective tissue
BIOSAMPLE
ASSAY
259 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the hippocampus
1
+ See 9 more…
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