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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
40
ChIP-seq
Assay category
195
DNA accessibility
40
DNA binding
Target of assay
47
transcription factor
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
40
November, 2017
9
November, 2018
3
October, 2019
2
August, 2017
1
November, 2020
Available data
2396
bam
2113
bigWig
1532
tsv
1038
fastq
800
bed narrowPeak
546
bigBed narrowPeak
237
bed broadPeak
235
bigBed broadPeak
233
bed bed3+
161
txt
153
zippedFastqFolder
71
tagAlign
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
2
ibed
2
tar
1
bedpe
1
vcf
Organism
235
Homo sapiens
Biosample type
171
tissue
41
cell line
22
primary cell
1
in vitro differentiated cells
Organ
78
kidney
45
liver
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
vasculature
9
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
235
AMP
Genome assembly (visualization)
223
GRCh38
213
hg19
Lab
235
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
vasculature
target.investigated_as!
histone
RNA binding protein
BIOSAMPLE
ASSAY
235 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
40
Panc1
1
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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