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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
71
ChIP-seq
Assay category
172
DNA accessibility
71
DNA binding
Target of assay
46
transcription factor
25
histone
25
histone modification
14
broad histone mark
11
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
15
August, 2017
7
November, 2018
5
October, 2019
1
November, 2020
Available data
3129
bam
2892
bigWig
1574
tsv
1561
bed narrowPeak
1337
fastq
902
bigBed narrowPeak
280
tagAlign
271
bed broadPeak
243
bigBed broadPeak
236
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
22
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
243
Homo sapiens
Biosample type
149
tissue
59
cell line
34
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
243
AMP
Genome assembly (visualization)
230
hg19
227
GRCh38
Lab
243
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vein
brain
BIOSAMPLE
ASSAY
243 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 26 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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