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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
DNase-seq
58
ChIP-seq
Assay category
83
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
80
June, 2019
58
November, 2017
3
November, 2018
Available data
825
bam
753
bigWig
624
bed narrowPeak
465
fastq
462
bigBed narrowPeak
198
tsv
141
bed broadPeak
141
bigBed broadPeak
91
bed bed3+
86
tagAlign
64
xls
62
txt
7
bed bedMethyl
7
bigBed bedMethyl
6
csv
3
hic
3
tar
2
bedpe bed3+
1
bed bed3
1
hdf5
1
vcf
Organism
141
Homo sapiens
Biosample type
71
tissue
58
cell line
12
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
141
AMP
Genome assembly (visualization)
134
hg19
127
GRCh38
Lab
141
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
141 results
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DNase-seq
ChIP-seq
tissue
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 6 more…
cell line
HepG2
58
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
+ See 5 more…
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