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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
Assay category
DNA accessibility
63
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
56
November, 2017
7
August, 2017
Available data
2625
bam
2372
bigWig
1586
tsv
1138
fastq
885
bed narrowPeak
559
bigBed narrowPeak
251
tagAlign
157
txt
93
zippedFastqFolder
78
bed broadPeak
63
bigBed broadPeak
52
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
63
Homo sapiens
Biosample type
50
cell line
13
primary cell
Organ
50
liver
6
brain
4
epithelium
4
vasculature
2
blood vessel
Project
63
AMP
Genome assembly (visualization)
63
hg19
49
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
cell line
HepG2
50
primary cell
skeletal muscle myoblast
7
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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