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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
Assay category
DNA accessibility
54
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
49
November, 2017
5
August, 2017
Available data
2522
bam
2286
bigWig
1586
tsv
1049
fastq
800
bed narrowPeak
466
bigBed narrowPeak
251
tagAlign
157
txt
93
zippedFastqFolder
69
bed broadPeak
54
bigBed broadPeak
50
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
54
Homo sapiens
Biosample type
46
cell line
8
primary cell
Organ
46
liver
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
54
AMP
Genome assembly (visualization)
54
hg19
42
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
5
inconsistent control read length
target.investigated_as!
broad histone mark
RNA binding protein
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
cell line
HepG2
46
primary cell
skeletal muscle myoblast
5
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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