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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
63
ChIP-seq
Assay category
199
DNA accessibility
63
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
56
November, 2017
9
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
2819
bam
2567
bigWig
1584
tsv
1240
fastq
1238
bed narrowPeak
768
bigBed narrowPeak
279
bed broadPeak
262
bigBed broadPeak
253
bed bed3+
202
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
262
Homo sapiens
Biosample type
172
tissue
50
cell line
39
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
262
AMP
Genome assembly (visualization)
247
GRCh38
239
hg19
Lab
262
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
262 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
50
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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