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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
12
DNase-seq
Assay category
63
DNA binding
12
DNA accessibility
Target of assay
49
transcription factor
28
histone
28
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
56
November, 2017
9
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
2609
bam
2385
bigWig
1584
tsv
1240
fastq
1056
bed narrowPeak
566
bigBed narrowPeak
202
tagAlign
161
txt
153
zippedFastqFolder
92
bed broadPeak
75
bigBed broadPeak
66
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
75
Homo sapiens
Biosample type
50
cell line
15
primary cell
9
tissue
1
in vitro differentiated cells
Organ
53
liver
8
brain
4
epithelium
4
vasculature
3
connective tissue
2
blood vessel
2
pancreas
1
adipose tissue
1
spleen
Project
75
AMP
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
month_released!
October, 2019
June, 2019
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
cell line
HepG2
50
primary cell
skeletal muscle myoblast
7
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
osteoblast
1
tissue
body of pancreas
2
brain
2
liver
2
omental fat pad
1
right lobe of liver
1
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in vitro differentiated cells
adipocyte
1
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