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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
47
ChIP-seq
Assay category
204
DNA accessibility
47
DNA binding
Target of assay
47
transcription factor
19
histone
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
47
November, 2017
9
November, 2018
7
October, 2019
August, 2017
1
November, 2020
Available data
2428
bam
2146
bigWig
1511
tsv
944
fastq
927
bed narrowPeak
639
bigBed narrowPeak
253
bed broadPeak
251
bigBed broadPeak
227
bed bed3+
161
txt
153
zippedFastqFolder
66
tagAlign
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
251
Homo sapiens
Biosample type
176
tissue
45
cell line
30
primary cell
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
251
AMP
Genome assembly (visualization)
239
GRCh38
228
hg19
Lab
251
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
histone modification
month_released!
August, 2017
BIOSAMPLE
ASSAY
251 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 17 more…
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