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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
49
ChIP-seq
5
Hi-C
Assay category
206
DNA accessibility
49
DNA binding
5
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
47
November, 2017
9
November, 2018
8
October, 2019
4
August, 2017
4
July, 2019
1
November, 2020
Available data
2609
bam
2302
bigWig
1600
tsv
1130
fastq
968
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
248
bed bed3+
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
260
Homo sapiens
Biosample type
176
tissue
46
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
8
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
260
AMP
Genome assembly (visualization)
242
GRCh38
237
hg19
Lab
260
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
broad histone mark
BIOSAMPLE
ASSAY
260 results
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DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
44
Panc1
1
1
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
cardiac fibroblast
3
skeletal muscle myoblast
1
2
brain pericyte
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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