Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
30
DNase-seq
Assay category
78
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
63
November, 2017
24
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1483
bam
1395
bigWig
979
fastq
831
bed narrowPeak
524
tsv
479
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
108
Homo sapiens
Biosample type
tissue
58
cell line
49
primary cell
1
in vitro differentiated cells
Organ
59
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
108
AMP
Genome assembly (visualization)
101
hg19
90
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
other post-translational modification
biosample_type!
tissue
BIOSAMPLE
ASSAY
108 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
57
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download