Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
2
DNase-seq
Assay category
78
DNA binding
2
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
63
November, 2017
15
August, 2017
2
October, 2019
Available data
3387
bam
3124
bigWig
1772
bed narrowPeak
1600
tsv
1353
fastq
1037
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
57
cell line
22
primary cell
1
in vitro differentiated cells
Organ
57
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
Project
80
AMP
Genome assembly (visualization)
80
hg19
62
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
other post-translational modification
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
57
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
Download