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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
68
transcription factor
55
histone
55
histone modification
28
broad histone mark
27
narrow histone mark
11
RNA binding protein
9
control
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
12
August, 2017
8
November, 2017
5
December, 2017
2
October, 2019
1
August, 2021
Available data
407
bigWig
400
bed narrowPeak
378
bam
242
bigBed narrowPeak
147
tagAlign
118
fastq
36
bed broadPeak
16
bigBed broadPeak
12
bed bed3+
Organism
28
Homo sapiens
Biosample type
9
primary cell
8
cell line
6
tissue
4
in vitro differentiated cells
1
stem cell
Organ
9
liver
6
pancreas
3
epithelium
2
blood vessel
2
vasculature
2
vein
1
embryo
Project
28
AMP
Genome assembly (visualization)
28
hg19
25
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
primary cell
skeletal muscle myoblast
6
endothelial cell of umbilical vein
2
hepatocyte
1
cell line
HepG2
8
tissue
islet of Langerhans
6
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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